species:   Clros
pid:       PID1840
parent:    cro-mir-6
paralog:   
locus:     CADEHS020000011.2:790173-790217
matures:   ['UAGGACUCGAGUAGUUAUAAC', 'GCUGACUGCUCGAGCCCUAG']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000011.2:790173-790217

1 out of bounds
141 alignments
140 proper strand
136 stranded perfect matches

********************* ********************** 
UAGGACUCGAGUAGUUAUAACCAAGCUGACUGCUCGAGCCCUAGG
((((.((((((((((((.........)))))))))))).))))..
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=92 c
------------------------GCUGACUGCUCGAGCCCUAG- l=20 a=0 c*
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=92 ma
------------------------GCUGACUGCUCGAGCCCUAG- l=20 a=0 ma*

UAGGACUCGAGUAGUUAUA-------------------------- l=19 a=1 
UAGGACUCGAGUAGUUAUAA------------------------- l=20 a=10 
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=92 (c,ma)
UAGGACUCGAGUAGcUAUAAC------------------------ l=21 a=1 
UAuGACUCGAGUAGUUAUAAC------------------------ l=21 a=1 
UAGGACUCGAGUAGUUAUAACC----------------------- l=22 a=26 
UAGGACUCGAGUAGUUAUAACCAA--------------------- l=24 a=3 
UAGGACUCGAGUAGUUgUAACCAAG-------------------- l=25 a=1 
UAGGACUCGAGUAGUUAUAACCAAG-------------------- l=25 a=3 
UAGGACUCGAGUAGUUAUAACCAAGC------------------- l=26 a=1 
UAGGACUCGAGUAGUUAUAACCAAGa------------------- l=26 a=1 

mb-01011
ax-1011111
ku-11
ss-111111101110
fn-111
